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Supported Instruments and Tools
Our team, our customers, and the broader DataJoint community have built pipelines around a wide array of instruments, software, and methodologies for neuroscience and behavioral analysis.
ScanBox
A commercial modular two-photon microscopy system and software developed by Neurolabware, designed for in vivo optical imaging in neuroscience.
Dario Ringach
ScanImage
Widely used open-source software for controlling laser-scanning microscopes (typically two-photon) for in vivo calcium imaging and photostimulation experiments.
Karel Svoboda Lab, Bernardo Sabatini Lab, Bernardo Sabatini Lab initially by Thomas Pologruto
SLEAP
An open-source, deep-learning based framework for multi-animal markerless pose tracking, capable of tracking multiple individuals even in complex social interactions.
Talmo Pereira, Murthy Lab & Shaevitz Lab)
SpikeGLX
Software by Janelia Research Campus for acquiring and visualizing data from high-channel-count neurophysiology recording systems, especially Neuropixels probes.
Bill Karsh
SpikeInterface
An open-source Python framework designed to unify spike sorting and analysis tools, making it easier to run multiple sorters and compare results.
Samuel Garcia, Alessio Buccino, and Cole Hurwitz
TransnetYX Colony
A commercial animal colony management software designed to streamline research operations, track breeding, manage cages, and ensure compliance.
UCLA Miniscope 4.0
Open-source miniature fluorescence microscope (version 4.0) for in vivo calcium imaging in freely behaving animals.
Aniel Aharoni, Peyman Golshani, Alcino Silva, and Baljit Khakh
VAME (Variational Animal Motion Embedding)
A generative modeling framework for animal pose dynamics, allowing for the analysis, synthesis, and prediction of complex animal behavior.
Kevin Luxem and Pavol Bauer
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