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Supported Instruments and Tools
Our team, our customers, and the broader DataJoint community have built pipelines around a wide array of instruments, software, and methodologies for neuroscience and behavioral analysis.
mLIMS
A web-based laboratory information management system (LIMS) often used for managing mouse colonies, tracking breeding, and organizing experimental data.
MoSeq (Motion Sequencing)
A machine learning framework for unsupervised discovery and analysis of an animal's behavioral repertoire, identifying an "action grammar" from 3D pose data.
Sandeep Robert Datta
Neuroglancer
A WebGL-based viewer for volumetric and 2D neuroscience data, including image series, segmentations, and meshes. Often used for visualizing large connectomics datasets.
Jeremy Maitin-Shepard,
NeuroNexus
Designs and manufactures a wide range of neural probes (silicon microelectrodes) for acute and chronic electrophysiology recordings in various research applications.
Neuropixels
Ultra-high density probes, offering even more recording sites in a compact area.
Nikon (NIS-Elements)
Nikon provides advanced microscopy systems. NIS-Elements is their comprehensive software platform for microscope control, image acquisition, processing, and analysis.
OpenEphys
An open-source, modular data acquisition system for electrophysiology. It supports various electrode types and is widely used for recording neural activity.
Josh Siegle, Jakob Voigts
Patch-seq
An experimental technique that combines patch-clamp electrophysiology, single-cell RNA sequencing (transcriptomics), and morphological characterization from the same neuron.
Vivien Marx, Cathryn Cadwell
Plexon Inc.
Provides a comprehensive suite of solutions for electrophysiology research, including data acquisition systems, electrodes, and software for spike sorting and analysis.
Harvey W. Wiggins
Prairie View
Software historically associated with Prairie Technologies' multiphoton microscopes (now part of Bruker), used for system control and image acquisition.
PyRat
Open-source software for behavioral neuroscience experiments, allowing researchers to design and run complex behavioral tasks for rodents and control associated hardware.
Tulio Fernandes De Almeida, Abner Cardoso Rodrigues*†
Ripple Neuro
Develops and provides advanced neural interfacing and processing systems for research, including data acquisition hardware and software for electrophysiology.
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